IL_8VVQ_065
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGGUAA*UAAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVQ_065 not in the Motif Atlas
- Homologous match to IL_8GLP_291
- Geometric discrepancy: 0.1883
- The information below is about IL_8GLP_291
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46203.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VVQ|1|WA|C|1734
8VVQ|1|WA|G|1735
8VVQ|1|WA|G|1736
8VVQ|1|WA|U|1737
8VVQ|1|WA|A|1738
8VVQ|1|WA|A|1739
*
8VVQ|1|WA|U|1794
8VVQ|1|WA|A|1795
8VVQ|1|WA|A|1796
8VVQ|1|WA|A|1797
8VVQ|1|WA|U|1798
8VVQ|1|WA|G|1799
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain D
- uL18
- Chain F
- uL30
- Chain I
- L10
- Chain R
- L18A
- Chain S
- eL21
- Chain XA
- 5S ribosomal RNA; 5S rRNA
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