IL_8VVQ_114

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

8VVQ|1|WA|C|3703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_114 not in the Motif Atlas

Geometric match to IL_8CRE_089

Geometric discrepancy: 0.0787

The information below is about IL_8CRE_089

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8VVQ|1|WA|C|3702
8VVQ|1|WA|C|3703
8VVQ|1|WA|A|3704
8VVQ|1|WA|G|3705
*
8VVQ|1|WA|C|3751
8VVQ|1|WA|G|3752

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain ZA

Small subunit ribosomal RNA; SSU rRNA