IL_8VVQ_117

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8VVQ|1|WA|A|3713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_117 not in the Motif Atlas

Geometric match to IL_8CRE_092

Geometric discrepancy: 0.2287

The information below is about IL_8CRE_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

8VVQ|1|WA|G|3712
8VVQ|1|WA|A|3713
8VVQ|1|WA|A|3714
8VVQ|1|WA|U|3715
8VVQ|1|WA|G|3716
*
8VVQ|1|WA|C|3741
8VVQ|1|WA|G|3742
8VVQ|1|WA|C|3743

Current chains

Chain WA

28S rRNA

Nearby chains

Chain TA

Transfer RNA; tRNA

Chain ZA

Small subunit ribosomal RNA; SSU rRNA