IL_8VVQ_129
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAG*CGUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVQ_129 not in the Motif Atlas
- Geometric match to IL_8P9A_326
- Geometric discrepancy: 0.0906
- The information below is about IL_8P9A_326
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14250.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 10
Unit IDs
8VVQ|1|WA|C|4245
8VVQ|1|WA|A|4246
8VVQ|1|WA|G|4247
*
8VVQ|1|WA|C|4265
8VVQ|1|WA|G|4266
8VVQ|1|WA|U|4267
8VVQ|1|WA|G|4268
8VVQ|1|WA|G|4269
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain D
- uL18
- Chain J
- uL5
- Chain S
- eL21
- Chain XA
- 5S ribosomal RNA; 5S rRNA
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