IL_8VVQ_139

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8VVQ|1|WA|G|4524, 8VVQ|1|WA|A|4525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_139 not in the Motif Atlas

Geometric match to IL_8CRE_116

Geometric discrepancy: 0.0543

The information below is about IL_8CRE_116

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8VVQ|1|WA|C|4458
8VVQ|1|WA|U|4459
8VVQ|1|WA|C|4460
*
8VVQ|1|WA|G|4522
8VVQ|1|WA|U|4523
8VVQ|1|WA|G|4524
8VVQ|1|WA|A|4525
8VVQ|1|WA|G|4526

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain IC

peptide

Chain U

L23