IL_8VVQ_159

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_159 not in the Motif Atlas

Geometric match to IL_8CRE_012

Geometric discrepancy: 0.2449

The information below is about IL_8CRE_012

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

8VVQ|1|WA|C|4773
8VVQ|1|WA|C|4774
8VVQ|1|WA|C|4775
*
8VVQ|1|WA|G|4864
8VVQ|1|WA|G|4865

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

L9

Chain N

uL13