IL_8VVQ_170

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAACGCG*CUAAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_170 not in the Motif Atlas

Geometric match to IL_8OI5_135

Geometric discrepancy: 0.1327

The information below is about IL_8OI5_135

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41504.1

Basepair signature

cWW-tSH-L-R-L-tHH-cWW

Number of instances in this motif group

5

Unit IDs

8VVQ|1|XA|G|21
8VVQ|1|XA|A|22
8VVQ|1|XA|A|23
8VVQ|1|XA|C|24
8VVQ|1|XA|G|25
8VVQ|1|XA|C|26
8VVQ|1|XA|G|27
*
8VVQ|1|XA|C|52
8VVQ|1|XA|U|53
8VVQ|1|XA|A|54
8VVQ|1|XA|A|55
8VVQ|1|XA|G|56
8VVQ|1|XA|C|57

Current chains

Chain XA

5S rRNA

Nearby chains

Chain D

uL18

Chain J

uL5