IL_8VVQ_173
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVQ_173 not in the Motif Atlas
- Geometric match to IL_7A0S_007
- Geometric discrepancy: 0.1633
- The information below is about IL_7A0S_007
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
8VVQ|1|XA|G|71
8VVQ|1|XA|U|72
8VVQ|1|XA|U|73
8VVQ|1|XA|A|74
8VVQ|1|XA|G|75
8VVQ|1|XA|U|76
8VVQ|1|XA|A|77
8VVQ|1|XA|C|78
*
8VVQ|1|XA|G|98
8VVQ|1|XA|G|99
8VVQ|1|XA|A|100
8VVQ|1|XA|A|101
8VVQ|1|XA|U|102
8VVQ|1|XA|A|103
8VVQ|1|XA|C|104
Current chains
- Chain XA
- 5S rRNA
Nearby chains
- Chain D
- uL18
- Chain F
- uL30
- Chain I
- L10
- Chain R
- L18A
- Chain S
- eL21
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: