IL_8VVQ_175

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8VVQ|1|XA|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_175 not in the Motif Atlas

Geometric match to IL_8OI5_140

Geometric discrepancy: 0.1162

The information below is about IL_8OI5_140

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VVQ|1|XA|G|82
8VVQ|1|XA|A|83
8VVQ|1|XA|U|84
8VVQ|1|XA|G|85
*
8VVQ|1|XA|C|92
8VVQ|1|XA|G|93
8VVQ|1|XA|C|94

Current chains

Chain XA

5S rRNA

Nearby chains

Chain F

uL30

Chain I

L10

Chain R

L18A

Chain WA

Large subunit ribosomal RNA; LSU rRNA