IL_8VVQ_197

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

8VVQ|1|ZA|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_197 not in the Motif Atlas

Geometric match to IL_8CRE_410

Geometric discrepancy: 0.0762

The information below is about IL_8CRE_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8VVQ|1|ZA|G|411
8VVQ|1|ZA|G|412
8VVQ|1|ZA|G|413
*
8VVQ|1|ZA|C|424
8VVQ|1|ZA|G|425
8VVQ|1|ZA|A|426
8VVQ|1|ZA|U|427
8VVQ|1|ZA|U|428
8VVQ|1|ZA|C|429

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain JB

S9

Chain XB

S23