IL_8VVQ_205

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_205 not in the Motif Atlas

Geometric match to IL_8CRE_418

Geometric discrepancy: 0.1903

The information below is about IL_8CRE_418

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02511.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

2

Unit IDs

8VVQ|1|ZA|G|563
8VVQ|1|ZA|A|564
8VVQ|1|ZA|G|565
*
8VVQ|1|ZA|C|585
8VVQ|1|ZA|G|586
8VVQ|1|ZA|A|587
8VVQ|1|ZA|G|588
8VVQ|1|ZA|G|589
8VVQ|1|ZA|A|590
8VVQ|1|ZA|U|591
8VVQ|1|ZA|C|592

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EC

S30

Chain JB

S9