IL_8VVQ_206

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_206 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.261

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8VVQ|1|ZA|U|566
8VVQ|1|ZA|C|567
8VVQ|1|ZA|C|568
8VVQ|1|ZA|A|569
*
8VVQ|1|ZA|U|581
8VVQ|1|ZA|U|582
8VVQ|1|ZA|A|583
8VVQ|1|ZA|A|584

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain JB

S9

Chain YB

S24