IL_8VVQ_211

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_211 not in the Motif Atlas

Geometric match to IL_8CRE_425

Geometric discrepancy: 0.0647

The information below is about IL_8CRE_425

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VVQ|1|ZA|G|673
8VVQ|1|ZA|C|674
8VVQ|1|ZA|U|675
*
8VVQ|1|ZA|A|1030
8VVQ|1|ZA|A|1031
8VVQ|1|ZA|C|1032

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

S26

Chain NB

uS15

Chain WA

Large subunit ribosomal RNA; LSU rRNA