IL_8VVQ_212
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVQ_212 not in the Motif Atlas
- Geometric match to IL_8CRE_426
- Geometric discrepancy: 0.0537
- The information below is about IL_8CRE_426
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8VVQ|1|ZA|C|676
8VVQ|1|ZA|G|677
8VVQ|1|ZA|U|678
8VVQ|1|ZA|A|679
8VVQ|1|ZA|G|680
*
8VVQ|1|ZA|U|1025
8VVQ|1|ZA|C|1026
8VVQ|1|ZA|A|1027
8VVQ|1|ZA|A|1028
8VVQ|1|ZA|G|1029
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain LB
- S11
- Chain NB
- uS15
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
- Chain WB
- S15A
- Chain XB
- S23
Coloring options: