IL_8VVQ_215

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_215 not in the Motif Atlas

Geometric match to IL_8P9A_412

Geometric discrepancy: 0.0978

The information below is about IL_8P9A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

8VVQ|1|ZA|A|802
8VVQ|1|ZA|C|803
*
8VVQ|1|ZA|G|860
8VVQ|1|ZA|A|861
8VVQ|1|ZA|A|862
8VVQ|1|ZA|U|863

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain HB

eS7

Chain LB

S11

Chain WB

S15A

Chain XB

S23