IL_8VVQ_222
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 8VVQ|1|ZA|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVQ_222 not in the Motif Atlas
- Geometric match to IL_8CRE_434
- Geometric discrepancy: 0.0839
- The information below is about IL_8CRE_434
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8VVQ|1|ZA|C|931
8VVQ|1|ZA|G|932
8VVQ|1|ZA|G|933
8VVQ|1|ZA|G|934
8VVQ|1|ZA|G|935
*
8VVQ|1|ZA|C|1007
8VVQ|1|ZA|A|1008
8VVQ|1|ZA|A|1009
8VVQ|1|ZA|G|1010
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain AC
- S26
- Chain BA
- eL30
- Chain BB
- S3A
- Chain NB
- uS15
Coloring options: