IL_8VVQ_224

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8VVQ|1|ZA|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_224 not in the Motif Atlas

Geometric match to IL_6UFM_001

Geometric discrepancy: 0.1924

The information below is about IL_6UFM_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

8VVQ|1|ZA|G|952
8VVQ|1|ZA|C|953
8VVQ|1|ZA|U|954
8VVQ|1|ZA|A|955
8VVQ|1|ZA|G|956
*
8VVQ|1|ZA|C|967
8VVQ|1|ZA|U|968
8VVQ|1|ZA|U|969
8VVQ|1|ZA|G|970
8VVQ|1|ZA|G|971
8VVQ|1|ZA|A|972
8VVQ|1|ZA|C|973
8VVQ|1|ZA|C|974

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain BB

S3A

Chain OB

S14

Chain WA

Large subunit ribosomal RNA; LSU rRNA