IL_8VVQ_236

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_236 not in the Motif Atlas

Geometric match to IL_8CRE_447

Geometric discrepancy: 0.0874

The information below is about IL_8CRE_447

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8VVQ|1|ZA|G|1235
8VVQ|1|ZA|G|1236
*
8VVQ|1|ZA|C|1521
8VVQ|1|ZA|A|1522
8VVQ|1|ZA|C|1523

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain PB

S15

Chain SA

Transfer RNA; tRNA

Chain SB

S18

Chain UA

Transfer RNA; tRNA