IL_8VVQ_259
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8VVQ|1|ZA|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVQ_259 not in the Motif Atlas
- Geometric match to IL_7VYX_002
- Geometric discrepancy: 0.3889
- The information below is about IL_7VYX_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8VVQ|1|ZA|C|1708
8VVQ|1|ZA|G|1709
8VVQ|1|ZA|C|1710
8VVQ|1|ZA|U|1711
*
8VVQ|1|ZA|A|1822
8VVQ|1|ZA|A|1823
8VVQ|1|ZA|A|1824
8VVQ|1|ZA|A|1825
8VVQ|1|ZA|G|1826
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain MA
- eL41
- Chain UA
- Transfer RNA; tRNA
- Chain VA
- mRNA
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
- Chain XB
- S23
Coloring options: