IL_8VVQ_261

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_261 not in the Motif Atlas

Geometric match to IL_8CRE_471

Geometric discrepancy: 0.0805

The information below is about IL_8CRE_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8VVQ|1|ZA|C|1717
8VVQ|1|ZA|G|1718
8VVQ|1|ZA|A|1719
8VVQ|1|ZA|U|1720
*
8VVQ|1|ZA|A|1813
8VVQ|1|ZA|G|1814
8VVQ|1|ZA|A|1815
8VVQ|1|ZA|G|1816

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain MA

eL41

Chain U

L23

Chain WA

Large subunit ribosomal RNA; LSU rRNA