IL_8VVR_049

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCC*GACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_049 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2861

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8VVR|1|WA|C|1250
8VVR|1|WA|C|1251
8VVR|1|WA|C|1252
8VVR|1|WA|C|1253
*
8VVR|1|WA|G|1264
8VVR|1|WA|A|1265
8VVR|1|WA|C|1266
8VVR|1|WA|G|1267

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

L29