IL_8VVR_227

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAU*GCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_227 not in the Motif Atlas

Geometric match to IL_8CRE_440

Geometric discrepancy: 0.124

The information below is about IL_8CRE_440

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8VVR|1|ZA|C|1098
8VVR|1|ZA|G|1099
8VVR|1|ZA|A|1100
8VVR|1|ZA|U|1101
*
8VVR|1|ZA|G|1131
8VVR|1|ZA|C|1132
8VVR|1|ZA|A|1133
8VVR|1|ZA|G|1134

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AB

RPSA

Chain AC

S26

Chain BB

S3A

Chain NB

uS15

Chain RB

eS17