IL_8VVR_240
3D structure
- PDB id
- 8VVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8VVR|1|ZA|C|1331, 8VVR|1|ZA|U|1494, 8VVR|1|ZA|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVR_240 not in the Motif Atlas
- Geometric match to IL_8P9A_439
- Geometric discrepancy: 0.1153
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VVR|1|ZA|U|1329
8VVR|1|ZA|G|1330
8VVR|1|ZA|C|1331
8VVR|1|ZA|A|1332
8VVR|1|ZA|U|1333
8VVR|1|ZA|G|1334
8VVR|1|ZA|G|1335
*
8VVR|1|ZA|U|1492
8VVR|1|ZA|C|1493
8VVR|1|ZA|U|1494
8VVR|1|ZA|G|1495
8VVR|1|ZA|U|1496
8VVR|1|ZA|G|1497
8VVR|1|ZA|A|1498
8VVR|1|ZA|U|1499
8VVR|1|ZA|G|1500
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain DB
- S3
- Chain DC
- uS14
- Chain KB
- S10
- Chain UA
- Transfer RNA; tRNA
- Chain UB
- uS10
- Chain VA
- mRNA
Coloring options: