IL_8VVT_008

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAU*AAAUGUG

Length

12 nucleotides

Bulged bases

8VVT|1|WA|G|119, 8VVT|1|WA|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_008 not in the Motif Atlas

Homologous match to IL_8GLP_287

Geometric discrepancy: 0.1261

The information below is about IL_8GLP_287

Detailed Annotation

Kink-turn with embedded cWW pair

Broad Annotation

No text annotation

Motif group

IL_65996.1

Basepair signature

cWW-L-cWW-L-tSH-R-cWW

Number of instances in this motif group

4

Unit IDs

8VVT|1|WA|C|118
8VVT|1|WA|G|119
8VVT|1|WA|A|120
8VVT|1|WA|A|121
8VVT|1|WA|U|122
*
8VVT|1|WA|A|147
8VVT|1|WA|A|148
8VVT|1|WA|A|149
8VVT|1|WA|U|150
8VVT|1|WA|G|151
8VVT|1|WA|U|152
8VVT|1|WA|G|153

Current chains

Chain WA

28S rRNA

Nearby chains

Chain G

eL8

Chain GA

uL29

Chain M

L15

Chain YA

5.8S ribosomal RNA; 5.8S rRNA