IL_8VVT_015

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

8VVT|1|WA|C|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_015 not in the Motif Atlas

Geometric match to IL_1U9S_005

Geometric discrepancy: 0.238

The information below is about IL_1U9S_005

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

8VVT|1|WA|C|339
8VVT|1|WA|C|340
8VVT|1|WA|G|341
8VVT|1|WA|G|342
*
8VVT|1|YA|C|32
8VVT|1|YA|G|33

Current chains

Chain WA

28S rRNA

Chain YA

5.8S rRNA

Nearby chains

Chain C

uL4

Chain IA

L37

Chain K

eL13

Chain M

L15