IL_8VVT_044

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUC*G(JMH)GCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: JMH

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_044 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3277

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8VVT|1|WA|G|1431
8VVT|1|WA|G|1432
8VVT|1|WA|A|1433
8VVT|1|WA|U|1434
8VVT|1|WA|C|1435
*
8VVT|1|WA|G|1460
8VVT|1|WA|JMH|1461
8VVT|1|WA|G|1462
8VVT|1|WA|C|1463
8VVT|1|WA|A|1464
8VVT|1|WA|C|1465

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

eL29

Chain P

eL18