IL_8VVT_063

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_063 not in the Motif Atlas

Geometric match to IL_8P9A_270

Geometric discrepancy: 0.0899

The information below is about IL_8P9A_270

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8VVT|1|WA|A|1754
8VVT|1|WA|G|1755
8VVT|1|WA|A|1756
*
8VVT|1|WA|U|1784
8VVT|1|WA|A|1785
8VVT|1|WA|U|1786

Current chains

Chain WA

28S rRNA

Nearby chains

Chain D

L5

Chain I

L10

Chain XA

5S ribosomal RNA; 5S rRNA