IL_8VVT_067

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AC(B8H)*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8H

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_067 not in the Motif Atlas

Geometric match to IL_8P9A_274

Geometric discrepancy: 0.189

The information below is about IL_8P9A_274

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8VVT|1|WA|A|1863
8VVT|1|WA|C|1864
8VVT|1|WA|B8H|1865
*
8VVT|1|WA|A|1879
8VVT|1|WA|C|1880
8VVT|1|WA|U|1881

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

eL29

Chain F

uL30

Chain XA

5S ribosomal RNA; 5S rRNA