IL_8VVT_071

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

8VVT|1|WA|G|1924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_071 not in the Motif Atlas

Geometric match to IL_8TSV_002

Geometric discrepancy: 0.3583

The information below is about IL_8TSV_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

8VVT|1|WA|U|1923
8VVT|1|WA|G|1924
8VVT|1|WA|C|1925
*
8VVT|1|WA|G|2068
8VVT|1|WA|G|2069

Current chains

Chain WA

28S rRNA

Nearby chains

Chain EA

eL33

Chain F

uL30

Chain L

L14

Chain N

uL13

Chain R

eL20