IL_8VVT_074
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUG(OMG)CGC
- Length
- 28 nucleotides
- Bulged bases
- 8VVT|1|WA|C|1940, 8VVT|1|WA|G|1945, 8VVT|1|WA|A|2046, 8VVT|1|WA|U|2049, 8VVT|1|WA|G|2050
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVT_074 not in the Motif Atlas
- Geometric match to IL_8CRE_055
- Geometric discrepancy: 0.1967
- The information below is about IL_8CRE_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83149.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VVT|1|WA|G|1938
8VVT|1|WA|A|1939
8VVT|1|WA|C|1940
8VVT|1|WA|C|1941
8VVT|1|WA|C|1942
8VVT|1|WA|C|1943
8VVT|1|WA|A|1944
8VVT|1|WA|G|1945
8VVT|1|WA|A|1946
8VVT|1|WA|A|1947
8VVT|1|WA|A|1948
8VVT|1|WA|A|1949
*
8VVT|1|WA|U|2043
8VVT|1|WA|G|2044
8VVT|1|WA|A|2045
8VVT|1|WA|A|2046
8VVT|1|WA|A|2047
8VVT|1|WA|A|2048
8VVT|1|WA|U|2049
8VVT|1|WA|G|2050
8VVT|1|WA|G|2051
8VVT|1|WA|A|2052
8VVT|1|WA|U|2053
8VVT|1|WA|G|2054
8VVT|1|WA|OMG|2055
8VVT|1|WA|C|2056
8VVT|1|WA|G|2057
8VVT|1|WA|C|2058
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain EA
- eL33
- Chain I
- L10
- Chain LA
- eL40
- Chain N
- uL13
- Chain XA
- 5S ribosomal RNA; 5S rRNA
Coloring options: