IL_8VVT_075

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8VVT|1|WA|U|1952

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_075 not in the Motif Atlas

Geometric match to IL_8P9A_281

Geometric discrepancy: 0.0817

The information below is about IL_8P9A_281

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8VVT|1|WA|G|1951
8VVT|1|WA|U|1952
8VVT|1|WA|G|1953
*
8VVT|1|WA|C|2040
8VVT|1|WA|C|2041

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

uL6

Chain LA

eL40

Chain R

eL20

Chain XA

5S ribosomal RNA; 5S rRNA