IL_8VVT_076

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8VVT|1|WA|A|1965

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_076 not in the Motif Atlas

Geometric match to IL_8CRE_057

Geometric discrepancy: 0.2498

The information below is about IL_8CRE_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8VVT|1|WA|U|1962
8VVT|1|WA|A|1963
8VVT|1|WA|U|1964
8VVT|1|WA|A|1965
8VVT|1|WA|G|1966
8VVT|1|WA|A|1967
8VVT|1|WA|C|1968
8VVT|1|WA|A|1969
8VVT|1|WA|G|1970
*
8VVT|1|WA|C|2027
8VVT|1|WA|C|2028
8VVT|1|WA|G|2029
8VVT|1|WA|A|2030
8VVT|1|WA|A|2031

Current chains

Chain WA

28S rRNA

Nearby chains

Chain LA

eL40

Chain QA

uL10