IL_8VVT_085

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

8VVT|1|WA|A|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_085 not in the Motif Atlas

Geometric match to IL_4MGN_001

Geometric discrepancy: 0.2643

The information below is about IL_4MGN_001

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8VVT|1|WA|U|2420
8VVT|1|WA|G|2421
8VVT|1|WA|A|2422
8VVT|1|WA|A|2423
8VVT|1|WA|C|2424
*
8VVT|1|WA|G|2432
8VVT|1|WA|A|2433
8VVT|1|WA|A|2434

Current chains

Chain WA

28S rRNA

Nearby chains

Chain KA

eL39

Chain O

uL22

Chain Q

eL19