IL_8VVT_086
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8VVT|1|WA|A|2517, 8VVT|1|WA|A|2518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVT_086 not in the Motif Atlas
- Geometric match to IL_8CRE_067
- Geometric discrepancy: 0.1327
- The information below is about IL_8CRE_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8VVT|1|WA|C|2451
8VVT|1|WA|U|2452
8VVT|1|WA|G|2453
8VVT|1|WA|A|2454
8VVT|1|WA|G|2455
*
8VVT|1|WA|C|2514
8VVT|1|WA|G|2515
8VVT|1|WA|A|2516
8VVT|1|WA|A|2517
8VVT|1|WA|A|2518
8VVT|1|WA|G|2519
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- L8
- Chain FA
- eL34
- Chain IA
- L37
- Chain KA
- eL39
- Chain YA
- 5.8S ribosomal RNA; 5.8S rRNA
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