IL_8VVT_100

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

8VVT|1|WA|G|3844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_100 not in the Motif Atlas

Geometric match to IL_8P9A_305

Geometric discrepancy: 0.0799

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8VVT|1|WA|G|2852
8VVT|1|WA|G|2853
8VVT|1|WA|A|2854
8VVT|1|WA|A|2855
8VVT|1|WA|G|2856
8VVT|1|WA|U|2857
8VVT|1|WA|C|2858
8VVT|1|WA|G|2859
8VVT|1|WA|G|2860
*
8VVT|1|WA|C|3842
8VVT|1|WA|U|3843
8VVT|1|WA|G|3844
8VVT|1|WA|U|3845
8VVT|1|WA|C|3846

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain U

L23