IL_8VVT_106
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8VVT|1|WA|A|3668, 8VVT|1|WA|U|3684, 8VVT|1|WA|C|3688
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVT_106 not in the Motif Atlas
- Geometric match to IL_8P9A_311
- Geometric discrepancy: 0.0802
- The information below is about IL_8P9A_311
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14684.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8VVT|1|WA|C|3665
8VVT|1|WA|G|3666
8VVT|1|WA|A|3667
8VVT|1|WA|A|3668
8VVT|1|WA|G|3669
8VVT|1|WA|G|3670
*
8VVT|1|WA|U|3682
8VVT|1|WA|G|3683
8VVT|1|WA|U|3684
8VVT|1|WA|U|3685
8VVT|1|WA|G|3686
8VVT|1|WA|A|3687
8VVT|1|WA|C|3688
8VVT|1|WA|G|3689
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- L8
- Chain OA
- eL43
- Chain ZA
- Small subunit ribosomal RNA; SSU rRNA
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