IL_8VVT_110

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_110 not in the Motif Atlas

Geometric match to IL_8P9A_316

Geometric discrepancy: 0.203

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8VVT|1|WA|PSU|3720
8VVT|1|WA|C|3721
8VVT|1|WA|A|3722
8VVT|1|WA|A2M|3723
8VVT|1|WA|A|3724
8VVT|1|WA|G|3725
8VVT|1|WA|U|3726
*
8VVT|1|WA|A|3737
8VVT|1|WA|A|3738
8VVT|1|WA|U|3739
8VVT|1|WA|G|3740
8VVT|1|WA|A|3741
8VVT|1|WA|A|3742
8VVT|1|WA|G|3743

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

L8

Chain HA

L36