IL_8VVT_138

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUC*GU(OMU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_138 not in the Motif Atlas

Geometric match to IL_5ZTM_002

Geometric discrepancy: 0.1113

The information below is about IL_5ZTM_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

8VVT|1|WA|A|4595
8VVT|1|WA|U|4596
8VVT|1|WA|C|4597
*
8VVT|1|WA|G|4623
8VVT|1|WA|U|4624
8VVT|1|WA|OMU|4625

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain U

L23