IL_8VVT_141

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

8VVT|1|WA|U|4639, 8VVT|1|WA|PSU|4641

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_141 not in the Motif Atlas

Geometric match to IL_8P9A_346

Geometric discrepancy: 0.2828

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98200.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

8VVT|1|WA|U|4637
8VVT|1|WA|G|4638
8VVT|1|WA|U|4639
8VVT|1|WA|A|4640
8VVT|1|WA|PSU|4641
8VVT|1|WA|OMG|4642
*
8VVT|1|WA|C|4667
8VVT|1|WA|G|4668
8VVT|1|WA|A|4669
8VVT|1|WA|A|4670
8VVT|1|WA|G|4671

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain CA

eL31

Chain V

L24