IL_8VVT_144

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8VVT|1|WA|A|4713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_144 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2377

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VVT|1|WA|G|4685
8VVT|1|WA|A|4686
8VVT|1|WA|U|4687
8VVT|1|WA|U|4688
8VVT|1|WA|A|4689
8VVT|1|WA|U|4690
*
8VVT|1|WA|A|4710
8VVT|1|WA|G|4711
8VVT|1|WA|A|4712
8VVT|1|WA|A|4713
8VVT|1|WA|U|4714
8VVT|1|WA|C|4715

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

uL6

Chain LA

eL40

Chain N

uL13