IL_8VVT_171

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUAAG*CUG

Length

9 nucleotides

Bulged bases

8VVT|1|ZA|A|60, 8VVT|1|ZA|A|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_171 not in the Motif Atlas

Geometric match to IL_8CRE_395

Geometric discrepancy: 0.243

The information below is about IL_8CRE_395

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61299.6

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8VVT|1|ZA|U|57
8VVT|1|ZA|C|58
8VVT|1|ZA|U|59
8VVT|1|ZA|A|60
8VVT|1|ZA|A|61
8VVT|1|ZA|G|62
*
8VVT|1|ZA|C|86
8VVT|1|ZA|U|87
8VVT|1|ZA|G|88

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

eS4

Chain GB

S6

Chain YB

eS24