IL_8VVT_174

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUGGU*AACG

Length

10 nucleotides

Bulged bases

8VVT|1|ZA|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_174 not in the Motif Atlas

Homologous match to IL_9PN5_149

Geometric discrepancy: 0.4965

The information below is about IL_9PN5_149

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8VVT|1|ZA|U|110
8VVT|1|ZA|A|111
8VVT|1|ZA|U|112
8VVT|1|ZA|G|113
8VVT|1|ZA|G|114
8VVT|1|ZA|U|115
*
8VVT|1|ZA|A|348
8VVT|1|ZA|A|349
8VVT|1|ZA|C|350
8VVT|1|ZA|G|351

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

eS4

Chain IB

eS8

Chain LB

S11