IL_8VVT_203

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_203 not in the Motif Atlas

Geometric match to IL_8P9A_412

Geometric discrepancy: 0.1322

The information below is about IL_8P9A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

8VVT|1|ZA|A|802
8VVT|1|ZA|C|803
*
8VVT|1|ZA|G|860
8VVT|1|ZA|A|861
8VVT|1|ZA|A|862
8VVT|1|ZA|U|863

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain HB

S7

Chain LB

S11

Chain WB

S15A