IL_8VVT_207

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_207 not in the Motif Atlas

Geometric match to IL_8AF0_004

Geometric discrepancy: 0.2542

The information below is about IL_8AF0_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VVT|1|ZA|C|877
8VVT|1|ZA|G|878
8VVT|1|ZA|C|879
*
8VVT|1|ZA|G|907
8VVT|1|ZA|A|908
8VVT|1|ZA|G|909

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain Q

eL19