IL_8VVT_208

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_208 not in the Motif Atlas

Geometric match to IL_6N5P_003

Geometric discrepancy: 0.2979

The information below is about IL_6N5P_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

8VVT|1|ZA|A|922
8VVT|1|ZA|G|923
*
8VVT|1|ZA|C|1019
8VVT|1|ZA|A|1020
8VVT|1|ZA|U|1021
8VVT|1|ZA|U|1022

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain BC

S27

Chain NB

uS15

Chain WB

S15A