IL_8VVT_232

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_232 not in the Motif Atlas

Geometric match to IL_8P9A_442

Geometric discrepancy: 0.1151

The information below is about IL_8P9A_442

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8VVT|1|ZA|U|1347
8VVT|1|ZA|G|1348
8VVT|1|ZA|G|1349
*
8VVT|1|ZA|C|1380
8VVT|1|ZA|G|1381
8VVT|1|ZA|A|1382

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AB

uS2

Chain CB

eS1

Chain DB

uS3

Chain RB

eS17