IL_8VVT_233

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*(5MC)G

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_233 not in the Motif Atlas

Geometric match to IL_8CRE_457

Geometric discrepancy: 0.1328

The information below is about IL_8CRE_457

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

8VVT|1|ZA|C|1363
8VVT|1|ZA|U|1364
8VVT|1|ZA|G|1365
*
8VVT|1|ZA|5MC|1374
8VVT|1|ZA|G|1375

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain RB

eS17