IL_8VVT_240

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8VVT|1|ZA|C|1701, 8VVT|1|ZA|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_240 not in the Motif Atlas

Geometric match to IL_4LFB_056

Geometric discrepancy: 0.1617

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8VVT|1|ZA|C|1700
8VVT|1|ZA|C|1701
8VVT|1|ZA|G|1702
*
8VVT|1|ZA|C|1833
8VVT|1|ZA|A|1834
8VVT|1|ZA|A|1835
8VVT|1|ZA|G|1836

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

eS26

Chain OB

uS11

Chain w

Serpine mRNA binding protein 1