IL_8VVT_243

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

8VVT|1|ZA|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_243 not in the Motif Atlas

Geometric match to IL_1DUQ_001

Geometric discrepancy: 0.3424

The information below is about IL_1DUQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

8VVT|1|ZA|C|1708
8VVT|1|ZA|G|1709
8VVT|1|ZA|C|1710
8VVT|1|ZA|U|1711
*
8VVT|1|ZA|A|1822
8VVT|1|ZA|A|1823
8VVT|1|ZA|A|1824
8VVT|1|ZA|A|1825
8VVT|1|ZA|G|1826

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain MA

eL41

Chain WA

Large subunit ribosomal RNA; LSU rRNA

Chain XB

uS12

Chain v

eukaryotic elongation factor 2

Chain w

Serpine mRNA binding protein 1