IL_8VVT_245

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_245 not in the Motif Atlas

Geometric match to IL_8CRE_471

Geometric discrepancy: 0.1002

The information below is about IL_8CRE_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8VVT|1|ZA|C|1717
8VVT|1|ZA|G|1718
8VVT|1|ZA|A|1719
8VVT|1|ZA|U|1720
*
8VVT|1|ZA|A|1813
8VVT|1|ZA|G|1814
8VVT|1|ZA|A|1815
8VVT|1|ZA|G|1816

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain MA

eL41

Chain U

L23

Chain WA

Large subunit ribosomal RNA; LSU rRNA